Birth Control: Brown discharge

Patient : Hello, I just started the birth control shot about two months ago and next month i have to go in for another shot but i was due for my period the 15th and i have brown stuff coming out of me, but when i use the bathroom there is some blood. i did recently have sex, and i started bleeding after it happened. the morning before we had sex i was bleeding so i thought it was my period but then it stopped and came back.. it was doing it for the whole day then the next day i had the brown show up.. what is happening?
Symptoms:  Brown discharge and some blood
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